PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32225.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 336aa    MW: 38739.1 Da    PI: 6.5533
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32225.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.7e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ l+d+++q+G g+W+t ++  g+ R++k+c++rw +yl
       KFK32225.1 15 KGPWTPEEDQTLIDYINQHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 62
                     79********************************************97 PP

2Myb_DNA-binding53.26.7e-1768112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  +G++ W++Ia++++ gRt++++k++w+++
       KFK32225.1  68 RGRFSFEEEETIIQLHSIMGNK-WSAIAARLP-GRTDNEIKNYWNTH 112
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1111062IPR017930Myb domain
SuperFamilySSF466891.17E-3112109IPR009057Homeodomain-like
SMARTSM007172.5E-131464IPR001005SANT/Myb domain
PfamPF002491.7E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-251669IPR009057Homeodomain-like
CDDcd001674.25E-121762No hitNo description
PROSITE profilePS5129425.02363117IPR017930Myb domain
SMARTSM007171.3E-1667115IPR001005SANT/Myb domain
PfamPF002492.4E-1568112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2670117IPR009057Homeodomain-like
CDDcd001674.04E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVRSPCCEKK NGLKKGPWTP EEDQTLIDYI NQHGYGNWRT LPKNAGLQRC GKSCRLRWTN  60
YLRPDIKRGR FSFEEEETII QLHSIMGNKW SAIAARLPGR TDNEIKNYWN THIRKRLLKM  120
GIDPVTHSPR LDLLDISSIL NSSLHNSSHH HLHQVYMSRL MMSDGHHHQS LVNPELLKFA  180
TSLFSTSQHH QNQNNPNTQE NQTELNHYQT GYNMIGSQEQ QSCFPTMDQF AEFEDLLPMK  240
TVQDSLPSFP SNHDDDYSNS NFALEPFYSE FASVLTTPSS SPTPLNSSST TYINSSTCST  300
EDEKESYCSI EIPNYSFDVN GLMQFQETKN HWDRVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29131175108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00429DAPTransfer from AT4G05100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431743.10.0PREDICTED: transcription factor MYB39-like
TrEMBLA0A087GQS30.0A0A087GQS3_ARAAL; Uncharacterized protein
STRINGAl_scaffold_0006_35840.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.11e-142myb domain protein 74